zeppelin/docs/interpreter/python.md
Hervé RIVIERE 34734b9c8a [ZEPPELIN-502] Python interpreter group
### What is this PR for?
Adding a python 2 &3 interpreter. It's a basic implementation (no py4j for example), with a java ProcessBuilder object used to instantiate a python REPL.

The interpreter doesn't bring it own python binary but uses the python specified by python.path configutation. Thus, you can still use your specific installed python modules (scikit-learn, matplotlib...) and the interpreter is able to work with python 2 & 3 without change.

I had a python helper  function (zeppelin_show() ) to easily display matplotlib graph as SVG.

### What type of PR is it?
[Feature]

### Todos
* [x] - Code review
* [x] - Improve bootstrap.py : choose available helper functions and their names
* [x] - Unit / IT tests ?
* [x] documentation updates needed, that AhyoungRyu pointed out
* [X] LICENSE needs to be updated to include all non-apache licensed dependencies (i.e AFAIK Py4j is BSD ) in bin-license
* [x]  double-check that code formatting conforms project style guide
* [x]  the branch need to be rebased on latest master.

### What is the Jira issue?
[ZEPPELIN-502](https://issues.apache.org/jira/browse/ZEPPELIN-502?jql=project%20%3D%20ZEPPELIN%20AND%20text%20~%20%22python%22)

### How should this be tested?

1. In interpreter screen, in Python section, specify in python.path the python binary you want to use
2. In a paragraph, you can use the interpreter with **_%python_**. Calling help() will describe you the interpreter functionnalities.
3. Install py4j (pip install py4j) if you want to use input form

### Screenshots
![image](https://cloud.githubusercontent.com/assets/12515751/14936724/5108fb60-0ef4-11e6-93ea-232a037f7957.png)

![image](https://cloud.githubusercontent.com/assets/12515751/14943716/98a75c4a-0fe0-11e6-9d4b-e10c39d53a15.png)

![image](https://cloud.githubusercontent.com/assets/12515751/14936715/0eec90de-0ef4-11e6-811b-7ebe46f0d279.png)

![image](https://cloud.githubusercontent.com/assets/12515751/14943722/b89b7824-0fe0-11e6-9c73-c12f7372d487.png)

### Questions:
* Does the licenses files need update? Yes, only bin-license (py4j)
* Is there breaking changes for older versions? No
* Does this needs documentation? Yes

Author: Hervé RIVIERE <hriviere@users.noreply.github.com>

Closes #869 from hriviere/PR_interpreter_python and squashes the following commits:

80b6e75 [Hervé RIVIERE] [ZEPPELIN-502] move BSD py4j license to zeppelin-distribution/src/bin_license/license
a4b82a5 [Hervé RIVIERE] [ZEPPELIN-502]Improving doc following @AhyoungRyu review
3252353 [Hervé RIVIERE] [ZEPPELIN-502] Formatting code to respect project convention
54ec4f1 [Hervé RIVIERE] [ZEPPELIN-502]Improving doc following @AhyoungRyu review
6a831bc [Hervé RIVIERE] [ZEPPELIN-502] Add BSD py4j license
11e1b9c [Hervé RIVIERE] [ZEPPELIN-502] minor changes in python.md
e5d0bdb [Hervé RIVIERE] [ZEPPELIN-502] change PYTHON_PATH to ZEPPELIN_PYTHON
c62ac98 [Hervé RIVIERE] [ZEPPELIN-502] Improve python.md
5008125 [Hervé RIVIERE] [ZEPPELIN-502] Improve python.md with features not yet supported and technical description
7d533e1 [Hervé RIVIERE] [ZEPPELIN-502] Add tests and reformating code to help tests writing
fecaf25 [Hervé RIVIERE] [ZEPPELIN-502] Rename python.path to python and default from /usr/bin/python to python
02d1320 [Hervé RIVIERE] [ZEPPELIN-502] Input form, change from simple input form to native (pyspark syntax)
60d2956 [Hervé RIVIERE] [ZEPPELIN-502] Indent as pep8 convention
9bdb192 [Hervé RIVIERE] [ZEPPELIN-502] Add python.md to _navigation.html
7142aa5 [Hervé RIVIERE] [ZEPPELIN-502] Catch exception in logger.error
1a86ad7 [Hervé RIVIERE] [ZEPPELIN-502] Python interpreter group
2016-05-31 23:34:05 +09:00

4.7 KiB

layout title description group
page Python Interpreter Python Interpreter manual

{% include JB/setup %}

Python 2 & 3 Interpreter for Apache Zeppelin

Configuration

Property Default Description
python python Path of the already installed Python binary (could be python2 or python3). If python is not in your $PATH you can set the absolute directory (example : /usr/bin/python)

Enabling Python Interpreter

In a notebook, to enable the Python interpreter, click on the Gear icon and select Python

Using the Python Interpreter

In a paragraph, use %python to select the Python interpreter and then input all commands.

The interpreter can only work if you already have python installed (the interpreter doesn't bring it own python binaries).

To access the help, type help()

Python modules

The interpreter can use all modules already installed (with pip, easy_install...)

Apply Zeppelin Dynamic Forms

You can leverage Zeppelin Dynamic Form inside your Python code.

Zeppelin Dynamic Form can only be used if py4j Python library is installed in your system. If not, you can install it with pip install py4j.

Example :

%python
### Input form
print (z.input("f1","defaultValue"))

### Select form
print (z.select("f1",[("o1","1"),("o2","2")],"2"))

### Checkbox form
print("".join(z.checkbox("f3", [("o1","1"), ("o2","2")],["1"])))

Zeppelin features not fully supported by the Python Interpreter

  • Interrupt a paragraph execution (cancel() method) is currently only supported in Linux and MacOs. If interpreter runs in another operating system (for instance MS Windows) , interrupt a paragraph will close the whole interpreter. A JIRA ticket (ZEPPELIN-893) is opened to implement this feature in a next release of the interpreter.
  • Progression bar in webUI (getProgress() method) is currently not implemented.
  • Code-completion is currently not implemented.

Matplotlib integration

The python interpreter can display matplotlib graph with the function zeppelin_show() You need to already have matplotlib module installed and a running XServer to use this functionality !

%python
import matplotlib.pyplot as plt
plt.figure()
(.. ..)
zeppelin_show(plt)
plt.close()

zeppelin_show function can take optional parameters to adapt graph width and height

%python
zeppelin_show(plt,width='50px')
zeppelin_show(plt,height='150px')

pythonmatplotlib

Technical description - Interpreter architecture

Dev prerequisites

  • Python 2 and 3 installed with py4j (0.9.2) and matplotlib (1.31 or later) installed on each

  • Tests only checks the interpreter logic and starts any Python process ! Python process is mocked with a class that simply output it input.

  • Make sure the code wrote in bootstrap.py and bootstrap_input.py is Python2 and 3 compliant.

  • Use PEP8 convention for python code.

Technical overview

  • When interpreter is starting it launches a python process inside a Java ProcessBuilder. Python is started with -i (interactive mode) and -u (unbuffered stdin, stdout and stderr) options. Thus the interpreter has a "sleeping" python process.

  • Interpreter sends command to python with a Java outputStreamWiter and read from an InputStreamReader. To know when stop reading stdout, interpreter sends print "*!?flush reader!?*"after each command and reads stdout until he receives back the *!?flush reader!?*.

  • When interpreter is starting, it sends some Python code (bootstrap.py and bootstrap_input.py) to initialize default behavior and functions (help(), z.input()...). bootstrap_input.py is sent only if py4j library is detected inside Python process.

  • Py4J python and java libraries is used to load Input zeppelin Java class into the python process (make java code with python code !). Therefore the interpreter can directly create Zeppelin input form inside the Python process (and eventually with some python variable already defined). JVM opens a random open port to be accessible from python process.

  • JavaBuilder can't send SIGINT signal to interrupt paragraph execution. Therefore interpreter directly send a kill SIGINT PID to python process to interrupt execution. Python process catch SIGINT signal with some code defined in bootstrap.py

  • Matplotlib display feature is made with SVG export (in string) and then displays it with html code.