### What is this PR for? This PR is the first of two major steps needed to improve matplotlib integration in Zeppelin (ZEPPELIN-1344). The latter, which is a plotting backend with fully interactive tools enabled, will be done afterwards in a separate PR. This PR specifically for automatically displaying output from calls to matplotlib plotting functions inline with each paragraph. Thanks to the addition of post-execute hooks (ZEPPELIN-1423), there is no need to call any `show()` function to display an inline plot, just like in Jupyter. ### What type of PR is it? Improvement ### Todos The main code has been written and anyone who reads this is encouraged to test it, but there are a few minor todos: - [x] - Add unit tests - [x] - Add documentation - [x] - Add screenshot showing iterative plotting with angular mode ### What is the Jira issue? [ZEPPELIN-1345](https://issues.apache.org/jira/browse/ZEPPELIN-1345) ### How should this be tested? In a pyspark or python paragraph, enter and run ``` python import matplotlib.pyplot as plt plt.plot([1, 2, 3]) ``` The plot should be displayed automatically without calling any `show()` function whatsoever. A special method called `configure_mpl()` can also be used to modify the inline plotting behavior. For example, ``` python z.configure_mpl(close=False, angular=True) plt.plot([1, 2, 3]) ``` allows for iterative updates to the plot provided you have PY4J installed for your python installation (which of course is always the case if you use pypsark). To clarify, this feature only currently works with pyspark (not python as there are no `angularBind()` and `angularUnbind()` methods yet). Doing something like: ``` plt.plot([3, 2, 1]) ``` will update the plot that was generated by the previous paragraph by leveraging Zeppelin's Angular Display System. However, by setting `close=False`, matplotlib will no longer automatically close figures so it is now up to the user to explicitly close each figure instance they create. There's quite a bit more options for `z.configure_mpl()`, but I will save that discussion for the documentation. ### Screenshots (if appropriate)  ### Questions: - Does the licenses files need update? No - Is there breaking changes for older versions? No - Does this needs documentation? Yes Author: Alex Goodman <agoodm@users.noreply.github.com> Closes #1534 from agoodm/ZEPPELIN-1345 and squashes the following commits:9ef6ff7[Alex Goodman] Move mpl backend files to /interpreter24f89c6[Alex Goodman] Catch potential NullPointerExceptions from hook registrybdb584e[Alex Goodman] Make sure expressions are printed when no plots are shown22b6fe4[Alex Goodman] Remove unused variabled3d1aa0[Alex Goodman] Fix CI test failurec90d204[Alex Goodman] Update spark.mdbcf0bf3[Alex Goodman] Update python.md for new matplotlib integrationc9b65a5[Alex Goodman] Add iterative plotting example image8029a05[Alex Goodman] Update python/README.mdf2d9e86[Alex Goodman] Exclude tests are excluded in python/pom.xml86b1c90[Alex Goodman] Fix tutorial notebook not loadingc37b00f[Alex Goodman] Fix legend in tutorial notebooka321d79[Alex Goodman] Update python.md82350e3[Alex Goodman] Update matplotlib tutorial notebook9792f97[Alex Goodman] Add unit tests8b9b973[Alex Goodman] Fix NullPointerExceptions in unit tests82135ad[Alex Goodman] Removed unused variablef9c9498[Alex Goodman] Added support for Angular Display Systemedf750a[Alex Goodman] Add new matplotlib backend for python/pyspark interpreters
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| layout | title | description | group |
|---|---|---|---|
| page | Python 2 & 3 Interpreter for Apache Zeppelin | Python is a programming language that lets you work quickly and integrate systems more effectively. | interpreter |
{% include JB/setup %}
Python 2 & 3 Interpreter for Apache Zeppelin
Configuration
| Property | Default | Description |
|---|---|---|
| zeppelin.python | python | Path of the already installed Python binary (could be python2 or python3). If python is not in your $PATH you can set the absolute directory (example : /usr/bin/python) |
| zeppelin.python.maxResult | 1000 | Max number of dataframe rows to display. |
Enabling Python Interpreter
In a notebook, to enable the Python interpreter, click on the Gear icon and select Python
Using the Python Interpreter
In a paragraph, use %python to select the Python interpreter and then input all commands.
The interpreter can only work if you already have python installed (the interpreter doesn't bring it own python binaries).
To access the help, type help()
Python modules
The interpreter can use all modules already installed (with pip, easy_install...)
Using Zeppelin Dynamic Forms
You can leverage Zeppelin Dynamic Form inside your Python code.
Zeppelin Dynamic Form can only be used if py4j Python library is installed in your system. If not, you can install it with pip install py4j.
Example :
%python
### Input form
print (z.input("f1","defaultValue"))
### Select form
print (z.select("f1",[("o1","1"),("o2","2")],"2"))
### Checkbox form
print("".join(z.checkbox("f3", [("o1","1"), ("o2","2")],["1"])))
Zeppelin features not fully supported by the Python Interpreter
- Interrupt a paragraph execution (
cancel()method) is currently only supported in Linux and MacOs. If interpreter runs in another operating system (for instance MS Windows) , interrupt a paragraph will close the whole interpreter. A JIRA ticket (ZEPPELIN-893) is opened to implement this feature in a next release of the interpreter. - Progression bar in webUI (
getProgress()method) is currently not implemented. - Code-completion is currently not implemented.
Matplotlib integration
The python interpreter can display matplotlib figures inline automatically using the pyplot module:
%python
import matplotlib.pyplot as plt
plt.plot([1, 2, 3])
This is the recommended method for using matplotlib from within a Zeppelin notebook. The output of this command will by default be converted to HTML by implicitly making use of the %html magic. Additional configuration can be achieved using the builtin z.configure_mpl() method. For example,
z.configure_mpl(width=400, height=300, fmt='svg')
plt.plot([1, 2, 3])
Will produce a 400x300 image in SVG format, which by default are normally 600x400 and PNG respectively. In the future, another option called angular can be used to make it possible to update a plot produced from one paragraph directly from another (the output will be %angular instead of %html). However, this feature is already available in the pyspark interpreter. More details can be found in the included "Zeppelin Tutorial: Python - matplotlib basic" tutorial notebook.
If Zeppelin cannot find the matplotlib backend files (which should usually be found in $ZEPPELIN_HOME/interpreter/lib/python) in your PYTHONPATH, then the backend will automatically be set to agg, and the (otherwise deprecated) instructions below can be used for more limited inline plotting.
If you are unable to load the inline backend, use z.show(plt):
%python
import matplotlib.pyplot as plt
plt.figure()
(.. ..)
z.show(plt)
plt.close()
The z.show() function can take optional parameters to adapt graph dimensions (width and height) as well as output format (png or optionally svg).
%python
z.show(plt, width='50px')
z.show(plt, height='150px', fmt='svg')
Pandas integration
Apache Zeppelin Table Display System provides built-in data visualization capabilities. Python interpreter leverages it to visualize Pandas DataFrames though similar z.show() API, same as with Matplotlib integration.
Example:
import pandas as pd
rates = pd.read_csv("bank.csv", sep=";")
z.show(rates)
SQL over Pandas DataFrames
There is a convenience %python.sql interpreter that matches Apache Spark experience in Zeppelin and enables usage of SQL language to query Pandas DataFrames and visualization of results though built-in Table Display System.
Pre-requests
- Pandas
pip install pandas - PandaSQL
pip install -U pandasql
In case default binded interpreter is Python (first in the interpreter list, under the Gear Icon), you can just use it as %sql i.e
- first paragraph
import pandas as pd
rates = pd.read_csv("bank.csv", sep=";")
- next paragraph
%sql
SELECT * FROM rates WHERE age < 40
Otherwise it can be referred to as %python.sql
Technical description
For in-depth technical details on current implementation please refer to python/README.md.