### What is this PR for?
Change the version to 0.13.0-SNAPSHOT
### What type of PR is it?
Improvement
### Todos
* [x] - Change versions to 0.13.0-SNAPSHOT
### How should this be tested?
The version should show 0.13.0-SNAPSHOT when building it.
### Screenshots (if appropriate)
### Questions:
* Does the license files need to update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Closes#4995 from jongyoul/minor/bump-up-0.13.0-snapshot.
Signed-off-by: Jongyoul Lee <jongyoul@gmail.com>
### What is this PR for?
Version up to the next version of 0.11.0-SNAPSHOT
Author: Jongyoul Lee <jongyoul@gmail.com>
Closes#4221 from jongyoul/minor-version-up and squashes the following commits:
c38c9910a [Jongyoul Lee] Version up to the latest stable version
a962b08ec [Jongyoul Lee] [MINOR] Version up to 0.11.0-SNAPSHOT
### What is this PR for?
Polish pom.xml files
- Delete unnecessary tags
- Delete duplicated dependencies
### What type of PR is it?
[Refactoring]
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-5370
### How should this be tested?
* CI
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: cuspymd <cuspymd@gmail.com>
Closes#4118 from cuspymd/polish-poms and squashes the following commits:
766278338 [cuspymd] Fix integration test error
385fcf2fd [cuspymd] Delete duplicated version of sub-modules
ba127bf16 [cuspymd] Recover duplicated dependencies related to spark interpreter
6fa7e1d51 [cuspymd] Polish pom.xml
### What is this PR for?
This commit declares all plugins in the `pluginManagement` section and unifies versions of
all plugins - they are now declared as properties in the top-level `pom.xml`. All other
`pom.xml` files shouldn't specify version explicitly.
### What type of PR is it?
Improvement
### What is the Jira issue?
* ZEPPELIN-4700
### How should this be tested?
* One build was clean: https://travis-ci.org/github/alexott/zeppelin/builds/668812389, but after removing the not necessary files from commit, some tests began to fail: https://travis-ci.org/github/alexott/zeppelin/builds/669129366 - not sure if it's a case of flaky tests (yes, it looks like it the case - after restart of failed builds - they are all green)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Alex Ott <alexott@gmail.com>
Closes#3707 from alexott/ZEPPELIN-4700 and squashes the following commits:
6de1eb393 [Alex Ott] [ZEPPELIN-4700] Cleanup Maven warnings & unify plugin management
### What is this PR for?
I noticed that the Zeppelin project mixes "commons-lang" and "commons-lang3". I have (hopefully) changed all imports to `commons-lang3`
I use `commons-lang3` 3.7, because this version was used in several submodules.
### What type of PR is it?
Improvement
### Todos
* [ ] - Is the replacement of `getFullStackTrace` to `getStackTrace` right?
* [ ] - commons-lang isn't deleted from main `pom.xml`. Okay?
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-4686
### How should this be tested?
* Unit-Tests withTravis CI https://travis-ci.org/github/Reamer/zeppelin/builds/663565663
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Philipp Dallig <philipp.dallig@gmail.com>
Closes#3691 from Reamer/commons-lang3 and squashes the following commits:
bf12fc07c [Philipp Dallig] Update to org.apache.commons commons-lang3
### What is this PR for?
Straightforward PR which rename zeppelin-interpreter-api to zeppelin-interpreter-shaded
### What type of PR is it?
[Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-4544
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? NO
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3619 from zjffdu/ZEPPELIN-4544 and squashes the following commits:
380d8484f [Jeff Zhang] [ZEPPELIN-4544]. Rename zeppelin-interpreter-api to zeppelin-interpreter-shaded
### What is this PR for?
This PR add a new module `zeppelin-jupyter-interpreter-shaded` which shaded the guava so that other module (python and r ) won't be bothered by the problem of guava conflict.
### What type of PR is it?
[Improvement ]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://jira.apache.org/jira/browse/ZEPPELIN-4532
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3585 from zjffdu/ZEPPELIN-4532 and squashes the following commits:
12afc937b [Jeff Zhang] [ZEPPELIN-4532]. Add a shaded version of zeppelin-jupyter-interpreter
### What is this PR for?
In ZEPPELIN-4480, we introduce zeppelin-jupyter-adapter which build a bridge between zeppelin and jupyter, zeppelin can extends this class to leverage any kernel of jupyter.
After a second thought, I think it is not enough. We can allow user to use jupyter kernel directly instead of implement one by one. So the purpose is to allow user use jupyter kernel like this
```
%jupyter(kernel=ipython)
python_code
...
```
Of course user can enhance the jupyter kernel in Zeppelin, e.g. IPythonInterpreter of Zeppelin can enhance the ipython kernel by adding support of ZeppelinContext
### What type of PR is it?
[Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://jira.apache.org/jira/browse/ZEPPELIN-4497#
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3558 from zjffdu/ZEPPELIN-4497 and squashes the following commits:
2efdc1e0e [Jeff Zhang] [ZEPPELIN-4497] Change zeppelin-jupyter-adapter to zeppelin-jupyter-interpreter
### What is this PR for?
This PR move the ipython code into module zeppelin-jupyter-adapter. And ipython will just depends on this module. zeppelin-jupyter-adapter could be used for connecting any jupyter kernel.
### What type of PR is it?
[ Feature | Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-4480
### How should this be tested?
* Ci pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3551 from zjffdu/ZEPPELIN-4480 and squashes the following commits:
78453473e [Jeff Zhang] [ZEPPELIN-4480]. Move the ipython code into a general jupyter kernel bridge
This issue is based out of comment https://github.com/apache/zeppelin/pull/3370#issuecomment-511281165, where Injellij shows unknown error.
[Improvement]
* [ZEPPELIN-4244](https://issues.apache.org/jira/browse/ZEPPELIN-4244)
* CI should be green
* Intellij IDE should not show any error
* Does the licenses files need update? N/A
* Is there breaking changes for older versions? N/A
* Does this needs documentation? N/A
Author: Prabhjyot Singh <prabhjyot.singh@cloudera.com>
Closes#3409 from prabhjyotsingh/ZEPPELIN-4244 and squashes the following commits:
840ef118b [Prabhjyot Singh] ZEPPELIN-4244: Intellij shows URI not regietered error for xmlns urls
Change-Id: I88afbbb79967648f2932d33524e68fb2c5670006
### What is this PR for?
This PR is to move zeppelin-interpreter-api jar out of interpreter jar, and put it under folder ${ZEPPELIN_HOME}/interpreter which is shared between all interpreters.
### What type of PR is it?
[Improvement]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-4153
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3361 from zjffdu/ZEPPELIN-4153 and squashes the following commits:
4491b0c0f [Jeff Zhang] address comment for pom file of cassandra
e12563dc2 [Jeff Zhang] [ZEPPELIN-4153]. Move zeppelin-interpreter-api jar out of interpreter jar
### What is this PR for?
This PR will break python code execution if the python process is existed. Besides that, I also improve the error message for ipython interpreter although it doesn't have such issue.
### What type of PR is it?
[Bug Fix]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-4081
### How should this be tested?
* Unit test is added
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3338 from zjffdu/ZEPPELIN-4081 and squashes the following commits:
907faacf6 [Jeff Zhang] ZEPPELIN-4081. when the python process is killed,the task state is still running
(cherry picked from commit c9514e26a0)
Signed-off-by: Jeff Zhang <zjffdu@apache.org>
### What is this PR for?
This PR will break python code execution if the python process is existed. Besides that, I also improve the error message for ipython interpreter although it doesn't have such issue.
### What type of PR is it?
[Bug Fix]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-4081
### How should this be tested?
* Unit test is added
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3338 from zjffdu/ZEPPELIN-4081 and squashes the following commits:
907faacf6 [Jeff Zhang] ZEPPELIN-4081. when the python process is killed,the task state is still running
### What is this PR for?
This is refactoring PR which move common dependencies into zeppelin-interpreter-parent
### What type of PR is it?
[Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3790
### How should this be tested?
* Ci pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3194 from zjffdu/ZEPPELIN-3790 and squashes the following commits:
0b34645a0 [Jeff Zhang] move junit to zeppelin-interpreter-parent
e4baa595e [Jeff Zhang] ZEPPELIN-3790. Move common interpreter dependencies into zeppelin-interpreter-parent
### What is this PR for?
By using the Raft protocol, multiple Zeppelin-Server groups are built into a Zeppelin cluster, the cluster State Machine is maintained through the Raft protocol, and the services in the cluster are agreed upon. The Zeppelin-Server and Zeppelin-Interperter services and processes are stored in the Cluster MetaData. Metadata information;
### What type of PR is it?
[Feature]
### Todos
* [x] add raft algorithm atomix jar
* [x] add cluster state machine
* [x] add state machine query command
* [x] add state machine delete command
* [x] add state machine put command
* [x] Isolate the netty JAR package introduced by atomix
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3610
### How should this be tested?
[CI pass](https://travis-ci.org/liuxunorg/zeppelin/builds/418742522)
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? Yes
Author: liuxunorg <33611720@qq.com>
Author: Jeff Zhang <zjffdu@gmail.com>
Closes#3183 from liuxunorg/ZEPPELIN-3610 and squashes the following commits:
c899b151f [liuxunorg] uncomment maven-dependency-plugin.
af728bd2c [liuxunorg] add more doc to explain this class's responsibility.
d268ee72e [Jeff Zhang] fix test (#2)
97f17acac [liuxunorg] Cluster Raft module design
### What is this PR for?
Trivial PR for module name refactoring.
### What type of PR is it?
[Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3774
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3175 from zjffdu/ZEPPELIN-3774 and squashes the following commits:
ea72df9e5 [Jeff Zhang] ZEPPELIN-3774. Rename module interpreter-parent to zeppelin-interpreter-parent
### What is this PR for?
This PR introduce new module zeppelin-interpreter-api which will shade all dependencies of zeppelin-interpreter, this is just to avoid the conflict with the custom interpreter implementation which may use jars that conflicts with dependency of zeppelin-interpreter.
### What type of PR is it?
[ Improvement]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3689
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3170 from zjffdu/ZEPPELIN-3689 and squashes the following commits:
f3f210aee [Jeff Zhang] ZEPPELIN-3689. Shade all dependencies of zeppelin-interpreter
### What is this PR for?
Avoiding outdated checkstyle error.
To check format
`mvn validate`
To fix non-complying files
`mvn fmt:format`
### What type of PR is it?
[Improvement | Refactoring]
### Todos
* [x] - Adopt `fmt-maven-plugin`
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3740
### How should this be tested?
CI passs
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? Yes for contributors
Author: Jongyoul Lee <jongyoul@gmail.com>
Closes#3158 from jongyoul/ZEPPELIN-3740 and squashes the following commits:
f06c50e90 [Jongyoul Lee] Adopt `fmt-maven-plugin` for google-java-format Adopt all files
### What is this PR for?
Increase the maven-shade-plugin version to 3.1.1
### What type of PR is it?
Bug Fix
### Todos
* [ ] - Task
### What is the Jira issue?
https://issues.apache.org/jira/projects/ZEPPELIN/issues/ZEPPELIN-3631
### How should this be tested?
Check if build succeeds
### Screenshots (if appropriate)
N/A
### Questions:
* Does the licenses files need update?
No
* Is there breaking changes for older versions?
No
* Does this needs documentation?
No
Author: Armin Wasicek <arminw@sumologic.com>
Closes#3077 from arminwasicek/bump-shade-plugin-version and squashes the following commits:
0697f0e1c [Armin Wasicek] Merge branch 'bump-shade-plugin-version' of github.com:arminwasicek/zeppelin into bump-shade-plugin-version
6c4cbe722 [Armin Wasicek] removed individual versions from scio and spark-dependencies
f0691f6eb [Armin Wasicek] increase the maven-shade-plugin version to 3.1.1
9e026a0ae [Armin Wasicek] removed individual versions from scio and spark-dependencies
2f282f080 [Armin Wasicek] increase the maven-shade-plugin version to 3.1.1
### What is this PR for?
fix pandasql query over dataframe for `master`. the reason is that it can't load `bootstrap_sql.py` from resources because path of path
### What type of PR is it?
[Bug Fix]
### Todos
* [x] - fix path to use relative
* [x] - enable tests
### What is the Jira issue?
https://issues.apache.org/jira/browse/ZEPPELIN-3625
### How should this be tested?
follow the steps in issue
### Screenshots (if appropriate)
before:
<img width="1268" alt="screen shot 2018-07-15 at 7 08 24 pm" src="https://user-images.githubusercontent.com/1642088/42732816-822682f0-8862-11e8-9d55-dd7d00b09b48.png">
after:
<img width="1239" alt="screen shot 2018-07-15 at 7 03 59 pm" src="https://user-images.githubusercontent.com/1642088/42732771-e712f848-8861-11e8-9ab9-eeb479082d1d.png">
### Questions:
* Does the licenses files need update?
* Is there breaking changes for older versions?
* Does this needs documentation?
Author: Khalid Huseynov <khalidhnv@gmail.com>
Closes#3071 from khalidhuseynov/fix-master/ZEPPELIN-3625 and squashes the following commits:
33aad7589 [Khalid Huseynov] fix matplotlib test
f94139b33 [Khalid Huseynov] enable all python tests
fd5685552 [Khalid Huseynov] remove unnecessary test
bde2316c7 [Khalid Huseynov] add test
8f9541411 [Khalid Huseynov] fix test setup not to interpret empty line
3a561d247 [Khalid Huseynov] fix from absolute to relative path in resources
### What is this PR for?
Fix the code style issue of python module
### What type of PR is it?
[Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3163
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? NO
Author: Jeff Zhang <zjffdu@apache.org>
Closes#3023 from zjffdu/ZEPPELIN-3163 and squashes the following commits:
e89c41108 [Jeff Zhang] [ZEPPELIN-3163]. Fix checkstyle of python
### What is this PR for?
This PR is trying to remove the code duplication between PySparkInterpreter and PythonInterpreter. So here's the main things this PR did:
* PySparkInterpreter extends PythonInterpreter
* PySparkInterpreterTest extends PythonInterpreterTest so that we can verify PySparkInterpreter can do whatever PythonInterpreter can do
* Move interpreter/lib/python/backend_zinline.py and interpreter/lib/python/mpl_config.py into python module, so that python module can ship these resources together.
### What type of PR is it?
[ Improvement | Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3375
### How should this be tested?
* CI pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#2919 from zjffdu/ZEPPELIN-3375 and squashes the following commits:
738c6c5 [Jeff Zhang] ZEPPELIN-3375. Make PySparkInterpreter extends PythonInterpreter
### What is this PR for?
This is for the refactoring of SparkInterpreter. See design doc. https://docs.google.com/document/d/1AfGg3aGXonDyri1jrP4MMFT4Y4j3wpN1t8kL-GAKSUc/edit?usp=sharing
### What type of PR is it?
[Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3111
### How should this be tested?
* Unit test is added.
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#2709 from zjffdu/ZEPPELIN-3111 and squashes the following commits:
aae4b09 [Jeff Zhang] ZEPPELIN-3111. Refactor SparkInterpreter
### What is this PR for?
trivial pom file change
### What type of PR is it?
[Improvement]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-3192
### How should this be tested?
* Travis pass
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#2748 from zjffdu/ZEPPELIN-3192 and squashes the following commits:
635acde [Jeff Zhang] ZEPPELIN-3192. Bump up Zeppelin version to 0.9.0-SNAPSHOT
### What is this PR for?
2 main changes.
* Introduce `interpreter-parent` module, so that all the interpreter can reuse the plugin defined in `interpreter-parent`
* Add new plugin for `copying interpreter-setting.json` to interpreter dir
### What type of PR is it?
[ Improvement | Refactoring]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-2982
### How should this be tested?
* First time? Setup Travis CI as described on https://zeppelin.apache.org/contribution/contributions.html#continuous-integration
* Strongly recommended: add automated unit tests for any new or changed behavior
* Outline any manual steps to test the PR here.
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#2613 from zjffdu/ZEPPELIN-2982 and squashes the following commits:
ccccd32 [Jeff Zhang] update doc
8f643a7 [Jeff Zhang] ZEPPELIN-2982. Copy interpreter-setting.json to interpreter dir
### What is this PR for?
This is the first step for implement IPython Interpreter in Zeppelin. I just use the jupyter_client to create and manage the ipython kernel. We don't need to care about python compilation and execution, all the things are delegated to ipython kernel. Ideally all the features of ipython should be available in Zeppelin as well.
For now, user can use %python.ipython for IPython Interpreter. And if ipython is available, the default python interpreter will use ipython. But user can still set `zeppelin.python.useIPython` as false to enforce to use the old implementation of python interpreter.
Main features:
* IPython interpreter support
** All the ipython features are available, including visualization, ipython magics.
* ZeppelinContext support
* Streaming output support
* Support Ipython in PySpark
Regarding the visualization, ideally all the visualization libraries work in jupyter should also work here.
In unit test, I only verify the following 3 popular visualization library. could add more later.
* matplotlib
* bokeh
* ggplot
### What type of PR is it?
[Feature ]
### Todos
* [ ] - Task
### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-2753
### How should this be tested?
Unit test is added.
### Screenshots (if appropriate)
Verify bokeh in IPython Interpreter
Verify matplotlib
Verify ZeppelinContext
Verify Streaming
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Jeff Zhang <zjffdu@apache.org>
Closes#2474 from zjffdu/ZEPPELIN-2753 and squashes the following commits:
e869f31 [Jeff Zhang] address comments
b0b5c95 [Jeff Zhang] [ZEPPELIN-2753] Basic Implementation of IPython Interpreter
### What is this PR for?
At compile time Zeppelin is downloading several external resources.
I want to be able to provide alternative URLs to compile when internet is not available(i.e. behind corporate proxy).
### What type of PR is it?
[Improvement]
### What is the Jira issue?
[ZEPPELIN-2766]
### How should this be tested?
```
mvn -DskipTests -Dplugin.frontend.downloadRoot=<alernative-url> -Dplugin.frontend.nodeDownloadRoot=<alernative-url> -Dplugin.frontend.yarnDownloadRoot=<alernative-url> -Dplugin.frontend.npmDownloadRoot=<alernative-url> -Dpypi.repo.url=<alernative-url> clean package
```
### Questions:
* Does the licenses files need update? NO
* Is there breaking changes for older versions? NO
* Does this needs documentation? NO
Author: andrea <andrea.peruffo1982@gmail.com>
Closes#2483 from andreaTP/softCodeRepos and squashes the following commits:
6894bcd5 [andrea] added docs for additional configurations
647417c3 [andrea] fix typo
1e5fd85f [andrea] remove deprecated downloadRoot
0aea864a [andrea] Keep online resources configurable
### What is this PR for?
Currently users who build Zeppelin from source need to include `-Ppyspark` to use `%pyspark` with embedded local Spark. But it's quite inconvenient to write this build profile every time we build i think. So I removed `-Ppyspark` and make pyspark related libraries automatically downloaded when we build Zeppelin.
### What type of PR is it?
Improvement
### Todos
* [x] - remove the rest of `-Ppyspark` build profile in `dev/create_release.sh`, `dev/publish_release.sh`, and `docs/install/build.md` after getting feedback
### What is the Jira issue?
[ZEPPELIN-2298](https://issues.apache.org/jira/browse/ZEPPELIN-2298)
### How should this be tested?
1. Apply this patch
2. Build source with below command
```
mvn clean package -DskipTests -pl 'zeppelin-interpreter, zeppelin-zengine, zeppelin-server, zeppelin-display, spark, spark-dependencies'
```
Aftr this step, there will be `pyspark` dir under `ZEPPELIN_HOME/interpreter/spark`. Before this PR, only `dep` dir and `zeppelin-spark_2.10-0.8.0-SNAPSHOT.jar` is generated without `-Ppyspark` build profile.
4. Restart Zeppelin. To make sure, run any python code e.g.
```
%pyspark
print("Hello "+z.input("name"))
```
It should be run successfully without any error
### Screenshots (if appropriate)
tl;dr Without `-Ppyspark` profile
- Before
<img width="856" alt="screen shot 2017-04-02 at 2 50 57 pm" src="https://cloud.githubusercontent.com/assets/10060731/24584778/0e8ec6b0-17b4-11e7-9f0d-f2599fd7bd63.png">
- After
<img width="893" alt="screen shot 2017-04-02 at 2 28 21 pm" src="https://cloud.githubusercontent.com/assets/10060731/24584779/10b7ed68-17b4-11e7-90d4-aa95eb9bba2d.png">
### Questions:
* Does the licenses files need update? no
* Is there breaking changes for older versions? no
* Does this needs documentation? no
I want to include `SparkR` by default(= remove `-PsparkR` build profile) like this as a next step. I want to ask how Zeppelin community think about this.
Author: AhyoungRyu <fbdkdud93@hanmail.net>
Closes#2213 from AhyoungRyu/ZEPPELIN-2298/includePysparkByDefault and squashes the following commits:
f7bcf06 [AhyoungRyu] Remove -Ppyspark in virtual_machine.md
458ac02 [AhyoungRyu] Remove the rest of -Ppyspark in blind side of Zeppelin :)
cee1e87 [AhyoungRyu] Change py4j.version -> python.py4j.version
ce43158 [AhyoungRyu] Change py4j.version -> spark.py4j.version
fa4fb36 [AhyoungRyu] Remove the rest of -Ppyspark
30aac81 [AhyoungRyu] Remove -Ppyspark build flag
### What is this PR for?
I've been testing the python interpreter and I found at least 4 major issues in the current python interpreter.
1. not working streaming output.
- https://issues.apache.org/jira/browse/ZEPPELIN-2225
2. printed "..." when there is indent in the python code.
- https://issues.apache.org/jira/browse/ZEPPELIN-1929
3. very slow output of matplotlib
- https://issues.apache.org/jira/browse/ZEPPELIN-1894
- https://issues.apache.org/jira/browse/ZEPPELIN-1360
4. Unexpected output of matplotlib.
- https://issues.apache.org/jira/browse/ZEPPELIN-2107
so I changed python interpreter to use py4j based on pyspark interpreter and would be fixed above issues.
and I am going to recreate conda, docker for python interpreter ASAP.
### What type of PR is it?
Bug Fix | Hot Fix | Refactoring
### How should this be tested?
1. not working streaming output.
```
import time
for x in range(0, 5):
print x
time.sleep(1)
```
2. printed "..." when there is indent in the python code.
```
def fn():
print("hi")
fn()
```
3. very slow output of matplotlib.
```
import matplotlib
import sys
import matplotlib.pyplot as plt
plt.plot([1,2,3])
```
4. Unexpected output of matplotlib.
```
import matplotlib.pyplot as plt
import matplotlib as mpl
# Make a figure and axes with dimensions as desired.
fig = plt.figure(figsize=(8, 3))
ax1 = fig.add_axes([0.05, 0.80, 0.9, 0.15])
ax2 = fig.add_axes([0.05, 0.475, 0.9, 0.15])
ax3 = fig.add_axes([0.05, 0.15, 0.9, 0.15])
# Set the colormap and norm to correspond to the data for which
# the colorbar will be used.
cmap = mpl.cm.cool
norm = mpl.colors.Normalize(vmin=5, vmax=10)
# ColorbarBase derives from ScalarMappable and puts a colorbar
# in a specified axes, so it has everything needed for a
# standalone colorbar. There are many more kwargs, but the
# following gives a basic continuous colorbar with ticks
# and labels.
cb1 = mpl.colorbar.ColorbarBase(ax1, cmap=cmap,
norm=norm,
orientation='horizontal')
cb1.set_label('Some Units')
# The second example illustrates the use of a ListedColormap, a
# BoundaryNorm, and extended ends to show the "over" and "under"
# value colors.
cmap = mpl.colors.ListedColormap(['r', 'g', 'b', 'c'])
cmap.set_over('0.25')
cmap.set_under('0.75')
# If a ListedColormap is used, the length of the bounds array must be
# one greater than the length of the color list. The bounds must be
# monotonically increasing.
bounds = [1, 2, 4, 7, 8]
norm = mpl.colors.BoundaryNorm(bounds, cmap.N)
cb2 = mpl.colorbar.ColorbarBase(ax2, cmap=cmap,
norm=norm,
# to use 'extend', you must
# specify two extra boundaries:
boundaries=[0] + bounds + [13],
extend='both',
ticks=bounds, # optional
spacing='proportional',
orientation='horizontal')
cb2.set_label('Discrete intervals, some other units')
# The third example illustrates the use of custom length colorbar
# extensions, used on a colorbar with discrete intervals.
cmap = mpl.colors.ListedColormap([[0., .4, 1.], [0., .8, 1.],
[1., .8, 0.], [1., .4, 0.]])
cmap.set_over((1., 0., 0.))
cmap.set_under((0., 0., 1.))
bounds = [-1., -.5, 0., .5, 1.]
norm = mpl.colors.BoundaryNorm(bounds, cmap.N)
cb3 = mpl.colorbar.ColorbarBase(ax3, cmap=cmap,
norm=norm,
boundaries=[-10] + bounds + [10],
extend='both',
# Make the length of each extension
# the same as the length of the
# interior colors:
extendfrac='auto',
ticks=bounds,
spacing='uniform',
orientation='horizontal')
cb3.set_label('Custom extension lengths, some other units')
plt.show()
```
### Questions:
* Does the licenses files need update? no
* Is there breaking changes for older versions? no
* Does this needs documentation? no
Author: astroshim <hsshim@zepl.com>
Author: Lee moon soo <moon@apache.org>
Author: HyungSung <hsshim@nflabs.com>
Closes#2106 from astroshim/py4jPythonInterpreter and squashes the following commits:
c9b195b [HyungSung] Merge pull request #16 from Leemoonsoo/py4jdocker
e511ebe [Lee moon soo] add PythonDockerInterpreter to interpreter-setting.json
a76b0d8 [Lee moon soo] fix test on python3
2eb5de7 [Lee moon soo] Fix PythonDockerInterpreterTest.java test
9fcf144 [Lee moon soo] Make python docker interpreter work using py4j
8a016c9 [astroshim] Merge branch 'master' into py4jPythonInterpreter
aad7ee8 [astroshim] fix testcase
ac92cdb [astroshim] fix python interpreter testcase
e8570d2 [astroshim] fix ci for pandassql
be5db4d [astroshim] fix pandas sql testcase
f8e19be [astroshim] fix matplotlib testcase
046db88 [astroshim] add testcase
e49ad24 [astroshim] add pandas
60e9820 [astroshim] bug fix about copying library
574bd21 [astroshim] fix interpreter-setting error
a48df58 [astroshim] Merge branch 'master' into py4jPythonInterpreter
3c9585f [astroshim] update interpreter-setting.json
a50179e [astroshim] add conda interpreter
cbbc15c [astroshim] fix py4j path
5ae5120 [astroshim] fix interpreter-setting
f17bff4 [astroshim] fix testcase failure.
af097ac [astroshim] add testcase
c3f5b78 [astroshim] Merge branch 'master' of https://github.com/apache/zeppelin into py4jPythonInterpreter
1395875 [astroshim] removed unnecessary code.
276011e [astroshim] add py4j lib
7304919 [astroshim] initialize python interpreter using py4j
### What is this PR for?
Bump up version to 0.8.0-SNAPSHOT
Author: Mina Lee <minalee@apache.org>
Closes#1883 from minahlee/0.8.0-SNAPSHOT and squashes the following commits:
b28ebe8 [Mina Lee] Bump up table/visualization plugin package version
fcaaa46 [Mina Lee] Bump up helium-dev version
180d2c6 [Mina Lee] Bump up version to 0.8.0-SNAPSHOT
### What is this PR for?
Use shared test library versions in maven config so that lib versions do mot be fragmented.
Previously we used multiple versions of
- Junit (4.11, 4.12)
- mockito (1.9.0, 1.10.8, ...)
- powermock (...)
### What type of PR is it?
[Improvement]
### What is the Jira issue?
[ZEPPELIN-1695](https://issues.apache.org/jira/browse/ZEPPELIN-1695)
### How should this be tested?
Use this command to see test libraries share versions or not
```
$ mvn org.apache.maven.plugins:maven-help-plugin:2.2:effective-pom | vim -
```
### Questions:
* Does the licenses files need update? - YES, I updated JUnit version to 4.12 from 4.11
* Is there breaking changes for older versions? - NO
* Does this needs documentation? - NO
Author: 1ambda <1amb4a@gmail.com>
Closes#1727 from 1ambda/feat/centralise-testing-libraries and squashes the following commits:
b6fd336 [1ambda] chore: Shared mockito, powermock version
941f1ba [1ambda] chore: Update junit to 4.12
### What is this PR for?
This PR is the first of two major steps needed to improve matplotlib integration in Zeppelin (ZEPPELIN-1344). The latter, which is a plotting backend with fully interactive tools enabled, will be done afterwards in a separate PR. This PR specifically for automatically displaying output from calls to matplotlib plotting functions inline with each paragraph. Thanks to the addition of post-execute hooks (ZEPPELIN-1423), there is no need to call any `show()` function to display an inline plot, just like in Jupyter.
### What type of PR is it?
Improvement
### Todos
The main code has been written and anyone who reads this is encouraged to test it, but there are a few minor todos:
- [x] - Add unit tests
- [x] - Add documentation
- [x] - Add screenshot showing iterative plotting with angular mode
### What is the Jira issue?
[ZEPPELIN-1345](https://issues.apache.org/jira/browse/ZEPPELIN-1345)
### How should this be tested?
In a pyspark or python paragraph, enter and run
``` python
import matplotlib.pyplot as plt
plt.plot([1, 2, 3])
```
The plot should be displayed automatically without calling any `show()` function whatsoever. A special method called `configure_mpl()` can also be used to modify the inline plotting behavior. For example,
``` python
z.configure_mpl(close=False, angular=True)
plt.plot([1, 2, 3])
```
allows for iterative updates to the plot provided you have PY4J installed for your python installation (which of course is always the case if you use pypsark). To clarify, this feature only currently works with pyspark (not python as there are no `angularBind()` and `angularUnbind()` methods yet). Doing something like:
```
plt.plot([3, 2, 1])
```
will update the plot that was generated by the previous paragraph by leveraging Zeppelin's Angular Display System. However, by setting `close=False`, matplotlib will no longer automatically close figures so it is now up to the user to explicitly close each figure instance they create. There's quite a bit more options for `z.configure_mpl()`, but I will save that discussion for the documentation.
### Screenshots (if appropriate)
### Questions:
- Does the licenses files need update? No
- Is there breaking changes for older versions? No
- Does this needs documentation? Yes
Author: Alex Goodman <agoodm@users.noreply.github.com>
Closes#1534 from agoodm/ZEPPELIN-1345 and squashes the following commits:
9ef6ff7 [Alex Goodman] Move mpl backend files to /interpreter
24f89c6 [Alex Goodman] Catch potential NullPointerExceptions from hook registry
bdb584e [Alex Goodman] Make sure expressions are printed when no plots are shown
22b6fe4 [Alex Goodman] Remove unused variable
d3d1aa0 [Alex Goodman] Fix CI test failure
c90d204 [Alex Goodman] Update spark.md
bcf0bf3 [Alex Goodman] Update python.md for new matplotlib integration
c9b65a5 [Alex Goodman] Add iterative plotting example image
8029a05 [Alex Goodman] Update python/README.md
f2d9e86 [Alex Goodman] Exclude tests are excluded in python/pom.xml
86b1c90 [Alex Goodman] Fix tutorial notebook not loading
c37b00f [Alex Goodman] Fix legend in tutorial notebook
a321d79 [Alex Goodman] Update python.md
82350e3 [Alex Goodman] Update matplotlib tutorial notebook
9792f97 [Alex Goodman] Add unit tests
8b9b973 [Alex Goodman] Fix NullPointerExceptions in unit tests
82135ad [Alex Goodman] Removed unused variable
f9c9498 [Alex Goodman] Added support for Angular Display System
edf750a [Alex Goodman] Add new matplotlib backend for python/pyspark interpreters
### What is this PR for?
Set project url to `http://zeppelin.apache.org` in pom.xml files
### What type of PR is it?
Refactoring
### Questions:
* Does the licenses files need update? no
* Is there breaking changes for older versions? no
* Does this needs documentation? no
Author: Mina Lee <minalee@apache.org>
Closes#1221 from minahlee/pom_url and squashes the following commits:
10de8cb [Mina Lee] Remove child url
ef0ef04 [Mina Lee] Change main class package name
ead4064 [Mina Lee] Use consistent url in pom.xml
### What is this PR for?
Add new interpreter to Python group: `%python.sql` for SQL over DataFrame support
### What type of PR is it?
Improvement
### TODOs
* [x] add new interpreter `%python.sql`
* [x] add test
* [x] make Python-dependant tests, excluded from CI
* PythonInterpreterWithPythonInstalledTest
* PythonPandasSqlInterpreterTest
* run manually by `mvn -Dpython.test.exclude='' test -pl python -am`
* [x] add docs `%python.sql`
* [x] make `%python.sql` fail gracefully in case there is no Pandas or PandaSQL installed
* [x] after #747 is merged - rebase and remove `-Dpython.test.exclude=''` from both profiles
### What is the Jira issue?
[ZEPPELIN-1115](https://issues.apache.org/jira/browse/ZEPPELIN-1115)
### How should this be tested?
`mvn -Dpython.test.exclude='' test -pl python -am` should pass or manually run
- Given the DataFrame i.e
```
%python
import pandas as pd
rates = pd.read_csv("bank.csv", sep=";")
```
- SQL query it like
```
%python.sql
SELECT * FROM rates LIMIT 10
```
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No, no dependencies were included in source or binary release
* Is there breaking changes for older versions? No
* Does this needs documentation? Yes
Author: Alexander Bezzubov <bzz@apache.org>
Closes#1164 from bzz/ZEPPELIN-1115/python/add-sql-for-dataframes and squashes the following commits:
0f2f852 [Alexander Bezzubov] Fail SQL gracefully if no python dependencies installed
aca2bdf [Alexander Bezzubov] Fix typos in docs ⚡158ba6a [Alexander Bezzubov] Remove third-party dependant test from CI
5fe46fc [Alexander Bezzubov] Update Python Matplotlib notebook example
72884c8 [Alexander Bezzubov] Add docs for %python.sql feature
e931dc4 [Alexander Bezzubov] Make test for PythonPandasSqlInterpreter usable
76bbb44 [Alexander Bezzubov] Complete implementation of the PythonPandasSqlInterpreter
f6ca1eb [Alexander Bezzubov] Add %python.sql to interpreter menue
11ba490 [Alexander Bezzubov] Add draft implementation of %python.sql for DataFrames
### What is this PR for?
Bump up version to 0.7.0-SNAPSHOT
Author: Mina Lee <minalee@apache.org>
Closes#1016 from minahlee/0.7.0-SNAPSHOT and squashes the following commits:
541e1b3 [Mina Lee] Bump up zeppelin-examples version to 0.7.0-SNAPSHOT
ea8c0ad [Mina Lee] Bump up version to 0.7.0-SNAPSHOT
### What is this PR for?
Implement paragraph ERROR status for Python interpreter in case of Error or Exception in the output.
### What type of PR is it?
Improvement
### What is the Jira issue?
[ZEPPELIN-1105](https://issues.apache.org/jira/browse/ZEPPELIN-1105)
### How should this be tested?
CI should pass, or
```
mvn "-Dtest=org.apache.zeppelin.python.PythonInterpreterWithPythonInstalledTest" test -pl python
```
should pass, or paragraph status should be ERROR for something like
```
import some-thing
```
### Screenshots (if appropriate)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Alexander Bezzubov <bzz@apache.org>
Closes#1124 from bzz/ZEPPELIN-1105/python/add-paragraph-error-statu and squashes the following commits:
a7bf8f3 [Alexander Bezzubov] Python: add missing license header
b585982 [Alexander Bezzubov] Python: include Python-dependant tests to 1 CI profile
e7d5371 [Alexander Bezzubov] Python: add ERROR paragraph status on Error and Exception in output
4c1107b [Alexander Bezzubov] Refactoring: rename and extract var assignment
### What is this PR for?
This PR is to automate release publish to maven repository.
We used to use maven-deploy-plugin and maven-release-plugin for release but somehow it didn't work well with Zeppelin so 0.5.5 and 0.5.6 haven't been published to maven repository.
Publishing release to maven repository will eventually help zeppelin to reduce binary package size by leading users to use Dynamic interpreter loading(#908).
Originally below modules were skipped for maven release
- all interpreters(except spark)
- zeppelin-display
- zeppelin-server
- zeppelin-distribution
on the other hand this pr will skip only:
- zeppelin-distribution
### What type of PR is it?
Infra
### Todos
- [x] Include SparkR/R interpreter in release
- [x] Create common_release.sh to remove build configuration duplication
- [x] Check curl networking failure
### What is the Jira issue?
[ZEPPELIN-986](https://issues.apache.org/jira/browse/ZEPPELIN-986)
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? Yes, https://cwiki.apache.org/confluence/display/ZEPPELIN/Preparing+Zeppelin+Release will be updated accordingly once this pr is merged.
Author: Mina Lee <minalee@apache.org>
Closes#994 from minahlee/ZEPPELIN-986 and squashes the following commits:
b0e8e67 [Mina Lee] Revert "Add geode, scalding profile in maven artifact build"
cd4cbcd [Mina Lee] curl failure check
c0ea07c [Mina Lee] Fix wrong indentation
a88bc1d [Mina Lee] Add geode, scalding profile in maven artifact build
2cced61 [Mina Lee] Add r to binary package and maven build
903bc12 [Mina Lee] Move duplicate code to common_release.sh
a3eb676 [Mina Lee] Include zeppelin-server module in publish artifiact
48d338f [Mina Lee] Rollback mistakenly removed plugin
aafaf42 [Mina Lee] Follow google shell style guide
30dcc65 [Mina Lee] remove deploy plugin from pom since custom script will be used instead for deploy
cd1f08c [Mina Lee] Refactor create release script
e764f5f [Mina Lee] Add maven publish release script
### What is this PR for?
Remove `incubating` term from pom files
### Questions:
* Does the licenses files need update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No
Author: Mina Lee <minalee@nflabs.com>
Closes#942 from minahlee/tlp/removeIncubating and squashes the following commits:
e605b54 [Mina Lee] Remove incubating from pom files
### What is this PR for?
Adding a python 2 &3 interpreter. It's a basic implementation (no py4j for example), with a java ProcessBuilder object used to instantiate a python REPL.
The interpreter doesn't bring it own python binary but uses the python specified by python.path configutation. Thus, you can still use your specific installed python modules (scikit-learn, matplotlib...) and the interpreter is able to work with python 2 & 3 without change.
I had a python helper function (zeppelin_show() ) to easily display matplotlib graph as SVG.
### What type of PR is it?
[Feature]
### Todos
* [x] - Code review
* [x] - Improve bootstrap.py : choose available helper functions and their names
* [x] - Unit / IT tests ?
* [x] documentation updates needed, that AhyoungRyu pointed out
* [X] LICENSE needs to be updated to include all non-apache licensed dependencies (i.e AFAIK Py4j is BSD ) in bin-license
* [x] double-check that code formatting conforms project style guide
* [x] the branch need to be rebased on latest master.
### What is the Jira issue?
[ZEPPELIN-502](https://issues.apache.org/jira/browse/ZEPPELIN-502?jql=project%20%3D%20ZEPPELIN%20AND%20text%20~%20%22python%22)
### How should this be tested?
1. In interpreter screen, in Python section, specify in python.path the python binary you want to use
2. In a paragraph, you can use the interpreter with **_%python_**. Calling help() will describe you the interpreter functionnalities.
3. Install py4j (pip install py4j) if you want to use input form
### Screenshots
### Questions:
* Does the licenses files need update? Yes, only bin-license (py4j)
* Is there breaking changes for older versions? No
* Does this needs documentation? Yes
Author: Hervé RIVIERE <hriviere@users.noreply.github.com>
Closes#869 from hriviere/PR_interpreter_python and squashes the following commits:
80b6e75 [Hervé RIVIERE] [ZEPPELIN-502] move BSD py4j license to zeppelin-distribution/src/bin_license/license
a4b82a5 [Hervé RIVIERE] [ZEPPELIN-502]Improving doc following @AhyoungRyu review
3252353 [Hervé RIVIERE] [ZEPPELIN-502] Formatting code to respect project convention
54ec4f1 [Hervé RIVIERE] [ZEPPELIN-502]Improving doc following @AhyoungRyu review
6a831bc [Hervé RIVIERE] [ZEPPELIN-502] Add BSD py4j license
11e1b9c [Hervé RIVIERE] [ZEPPELIN-502] minor changes in python.md
e5d0bdb [Hervé RIVIERE] [ZEPPELIN-502] change PYTHON_PATH to ZEPPELIN_PYTHON
c62ac98 [Hervé RIVIERE] [ZEPPELIN-502] Improve python.md
5008125 [Hervé RIVIERE] [ZEPPELIN-502] Improve python.md with features not yet supported and technical description
7d533e1 [Hervé RIVIERE] [ZEPPELIN-502] Add tests and reformating code to help tests writing
fecaf25 [Hervé RIVIERE] [ZEPPELIN-502] Rename python.path to python and default from /usr/bin/python to python
02d1320 [Hervé RIVIERE] [ZEPPELIN-502] Input form, change from simple input form to native (pyspark syntax)
60d2956 [Hervé RIVIERE] [ZEPPELIN-502] Indent as pep8 convention
9bdb192 [Hervé RIVIERE] [ZEPPELIN-502] Add python.md to _navigation.html
7142aa5 [Hervé RIVIERE] [ZEPPELIN-502] Catch exception in logger.error
1a86ad7 [Hervé RIVIERE] [ZEPPELIN-502] Python interpreter group
